Pykaryote documentation

Tutorial

The Tutorial provides an introduction to the Pykaryote package for the new user.

• Introduction
  • The Model
  • Interlocking Complexity
  • Evolution
• Installing Pykaryote
  • Dependencies
  • Getting pykaryote
  • Configuring pykaryote
  • Building Pykaryote
  • Finished
  • Updating
• Running Pykaryote in the GUI
  • The Run Simulations Window
  • The Analyze Simulations Window
• Running Pykaryote in the Command Line
  • Setting Up Simulations
  • Running Simulations
  • Analyzing Simulations
• Modifying and Expanding the Project
  • Modifying the Project
  • Contributing Your Work

Reference Manual

The Reference Manual documents the Pykaryote code. Consult this if you want to understand how the simulations work for your own enlightenment, or in order to make changes.

• User Scripts
  • run.py
  • analyze.py
  • mass_run.py
  • global_generator.py
  • pyk_gui.py
• Simulation Modules
  • Simulation
  • Environment
  • Organism
  • Genome
  • Families
  • Complexes
• Utility Modules
  • Analysis
  • Globals
  • RunFrame
  • AnalysisFrame
• Configuration Files
  • About
  • Variables

Indices and tables

• Index
• Module Index
• Search Page